Artykuł w czasopiśmie
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Fast evaluation of protein dynamics from deficient 15N relaxation data

Autor
JAREMKO, Łukasz
JAREMKO, MARIUSZ
Nowakowski, Michał
Ejchart, Andrzej
Data publikacji
2018
Abstrakt (EN)

Simple and convenient method of protein dynamics evaluation from the insufficient experimental 15N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse 15N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N–H vectors on two different time scales, S2 and Rex, can be elucidated. The generalized order parameter, S2, describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, Rex, identi-fies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed.

Słowa kluczowe EN
15N magnetic relaxation
Protein dynamics
Model-free approach
Ratio, product, and difference of relaxation rates
Semi-quantitative analysis of 15N relaxation data
Dyscyplina PBN
nauki chemiczne
Czasopismo
Journal of Biomolecular NMR
Tom
70
Zeszyt
4
Strony od-do
219-228
ISSN
0925-2738
Licencja otwartego dostępu
Inna