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Macromolecular modeling and design in Rosetta: recent methods and frameworks

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cris.lastimport.scopus2024-02-12T20:28:02Z
dc.abstract.enThe Rosetta software for macromolecular modeling, docking and design is extensively used in laboratories worldwide. During two decades of development by a community of laboratories at more than 60 institutions, Rosetta has been continuously refactored and extended. Its advantages are its performance and interoperability between broad modeling capabilities. Here we review tools developed in the last 5 years, including over 80 methods. We discuss improvements to the score function, user interfaces and usability.
dc.affiliationUniwersytet Warszawski
dc.contributor.authorGront, Dominik
dc.contributor.authorTeets, Frank D.
dc.contributor.authorWang, Ray Yu-Ruei
dc.contributor.authorThyme, Summer B.
dc.contributor.authorZimmerman, Lior
dc.contributor.authorWatkins, Andrew
dc.contributor.authorBonneau, Richard
dc.contributor.authorBasanta, Benjamin
dc.contributor.authorBarth, Patrick
dc.contributor.authorBarlow, Kyle A.
dc.contributor.authorBaker, David
dc.contributor.authorAprahamian, Melanie
dc.contributor.authorAlford, Rebecca F.
dc.contributor.authorCorreia, Bruno E.
dc.contributor.authorCooper, Seth
dc.contributor.authorCoventry, Brian
dc.contributor.authorWeitzner, Brian D.
dc.contributor.authorLeman, Julia Koehler
dc.contributor.authorFu, Darwin Y.
dc.contributor.authorFrenz, Brandon
dc.contributor.authorGoldschmidt, Lukasz
dc.contributor.authorGeniesse, Caleb
dc.contributor.authorGray, Jeffrey J.
dc.contributor.authorGowthaman, Ragul
dc.contributor.authorHorowitz, Scott
dc.contributor.authorGuffy, Sharon
dc.contributor.authorHuber, Thomas
dc.contributor.authorHuang, Po-Ssu
dc.contributor.authorConway, Patrick
dc.contributor.authorBystroff, Chris
dc.contributor.authorJong, René M. De
dc.contributor.authorBradley, Phil
dc.contributor.authorDas, Rhiju
dc.contributor.authorBoyken, Scott E.
dc.contributor.authorDsilva, Lorna
dc.contributor.authorBonet, Jaume
dc.contributor.authorDiMaio, Frank
dc.contributor.authorBlacklock, Kristin
dc.contributor.authorFord, Alexander S.
dc.contributor.authorBender, Brian J.
dc.contributor.authorDunbrack, Roland
dc.contributor.authorAlam, Nawsad
dc.contributor.authorAdolf-Bryfogle, Jared
dc.contributor.authorKhar, Karen R.
dc.contributor.authorLewis, Steven M.
dc.contributor.authorKhatib, Firas
dc.contributor.authorKhare, Sagar D.
dc.contributor.authorKing, Indigo C.
dc.contributor.authorKhramushin, Alisa
dc.contributor.authorKoepnick, Brian
dc.contributor.authorKleffner, Robert
dc.contributor.authorKuenze, Georg
dc.contributor.authorKortemme, Tanja
dc.contributor.authorKuhlman, Brian
dc.contributor.authorJacobs, Tim M.
dc.contributor.authorJohnson, David K.
dc.contributor.authorJeliazkov, Jeliazko R.
dc.contributor.authorKaranicolas, John
dc.contributor.authorKappel, Kalli
dc.contributor.authorKhakzad, Hamed
dc.contributor.authorLondon, Nir
dc.contributor.authorLinsky, Thomas
dc.contributor.authorLyskov, Sergey
dc.contributor.authorLubin, Joseph H.
dc.contributor.authorMalmström, Lars
dc.contributor.authorMaguire, Jack
dc.contributor.authorMarcu, Orly
dc.contributor.authorMarcos, Enrique
dc.contributor.authorMeiler, Jens
dc.contributor.authorMarze, Nicholas A.
dc.contributor.authorLabonte, Jason W.
dc.contributor.authorKuroda, Daisuke
dc.contributor.authorLapidoth, Gideon
dc.contributor.authorLai, Jason K.
dc.contributor.authorLindert, Steffen
dc.contributor.authorLeaver-Fay, Andrew
dc.contributor.authorOvchinnikov, Sergey
dc.contributor.authorPan, Xingjie
dc.contributor.authorPacella, Michael S.
dc.contributor.authorPavlovicz, Ryan E.
dc.contributor.authorPark, Hahnbeom
dc.contributor.authorPierce, Brian G.
dc.contributor.authorPethe, Manasi
dc.contributor.authorRaveh, Barak
dc.contributor.authorPilla, Kala Bharath
dc.contributor.authorRenfrew, P. Douglas
dc.contributor.authorMoretti, Rocco
dc.contributor.authorNerli, Santrupti
dc.contributor.authorMulligan, Vikram Khipple
dc.contributor.authorÓ’Conchúir, Shane
dc.contributor.authorNorn, Christoffer
dc.contributor.authorOllikainen, Noah
dc.contributor.authorSevy, Alexander M.
dc.contributor.authorSedan, Yuval
dc.contributor.authorShi, Lei
dc.contributor.authorSgourakis, Nikolaos G.
dc.contributor.authorSilva, Daniel-Adriano
dc.contributor.authorSiegel, Justin B.
dc.contributor.authorSong, Yifan
dc.contributor.authorSmith, Shannon
dc.contributor.authorSzegedy, Maria
dc.contributor.authorStein, Amelie
dc.contributor.authorRubenstein, Aliza
dc.contributor.authorBurman, Shourya S. Roy
dc.contributor.authorScheck, Andreas
dc.contributor.authorSauer, Marion F.
dc.contributor.authorSchueler-Furman, Ora
dc.contributor.authorSchief, William
dc.date.accessioned2024-01-25T05:30:32Z
dc.date.available2024-01-25T05:30:32Z
dc.date.issued2020
dc.description.financePublikacja bezkosztowa
dc.description.number7
dc.description.volume17
dc.identifier.doi10.1038/S41592-020-0848-2
dc.identifier.issn1548-7091
dc.identifier.urihttps://repozytorium.uw.edu.pl//handle/item/111643
dc.identifier.weblinkhttp://www.nature.com/articles/s41592-020-0848-2.pdf
dc.languageeng
dc.pbn.affiliationchemical sciences
dc.relation.ispartofNature Methods
dc.relation.pages665-680
dc.rightsClosedAccess
dc.sciencecloudnosend
dc.titleMacromolecular modeling and design in Rosetta: recent methods and frameworks
dc.typeJournalArticle
dspace.entity.typePublication